PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P33410_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 247aa MW: 25784.8 Da PI: 9.6389

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P33410_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.3e-39	13	73	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCdstntkfCy+nnysl+qPr+fCk+CrryWt+GGalrn+PvGgg+r++k+++ GSMUA_Achr6P33410_001 13 PQPGLKCPRCDSTNTKFCYFNNYSLAQPRHFCKTCRRYWTHGGALRNIPVGGGCRHSKRTK 73 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-31	1	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-32	17	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.124	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MADQARFAKV PQPQPGLKCP RCDSTNTKFC YFNNYSLAQP RHFCKTCRRY WTHGGALRNI 60 PVGGGCRHSK RTKSSAGSSS KSSTVTTQAG ASSSSSAAAS SAIGGAITSN IPLLSQLASL 120 HPLPDFGATN FGMGLSGIQA VDTMGFQIGG GGIELETLRL QQMHQFPLLG GPFTRQAQAN 180 PAGSELLTQL ASVNMDSHQL LNSPRQYVGV AHNVQFWTGG GGSSNSSDAG GWATDLSGFN 240 SSSGNIL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269\|PubMed:12887587}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269\|PubMed:10758484, ECO:0000269\|PubMed:12887587}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009406984.1	1e-137	PREDICTED: dof zinc finger protein DOF3.6-like
Refseq	XP_018682539.1	1e-137	PREDICTED: dof zinc finger protein DOF3.6-like
Refseq	XP_018682540.1	1e-137	PREDICTED: dof zinc finger protein DOF3.6-like
Swissprot	Q9M2U1	2e-45	DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBL	M0TCD4	1e-180	M0TCD4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P33410_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	3e-40	OBF-binding protein 3