PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P34420_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 476aa    MW: 52602.6 Da    PI: 6.7215
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P34420_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.33.4e-17155204155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSMUA_Achr6P34420_001 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204
                            78*******************......55************************998 PP
2AP241.92.5e-13247297155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ +++g
  GSMUA_Achr6P34420_001 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIRWNG 297
                            89********.7******5553..2.26**********99**********99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.2E-9155204IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-16155213IPR016177DNA-binding domain
SMARTSM003802.0E-32156218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-17156212IPR001471AP2/ERF domain
CDDcd000181.15E-10156212No hitNo description
PROSITE profilePS5103217.925156212IPR001471AP2/ERF domain
PfamPF008475.3E-9247297IPR001471AP2/ERF domain
CDDcd000181.34E-21247307No hitNo description
SuperFamilySSF541713.07E-16247306IPR016177DNA-binding domain
SMARTSM003802.1E-27248311IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-15248306IPR001471AP2/ERF domain
PROSITE profilePS5103215.448248305IPR001471AP2/ERF domain
PRINTSPR003671.9E-5249260IPR001471AP2/ERF domain
PRINTSPR003671.9E-5287307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MAHERLEAKI EFDLNVVSPC QSAAWASNSS EASSSAAAEE EDLRSTSGAA SLCFDNLRCP  60
TEPAVVDDDG EDEGGVLPER RVVTWPLLPT TVVASTFQPP VAANSSSTSR PGDLGFVERT  120
VGCAAEAEAR VLLHRQQQQQ EVVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGLDADIN FDLNDYDEDL NQMRNLTKEE FVHILRRQST  240
GFARGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFDS EIEAARAYDK AAIRWNGRVA  300
ITNFESSLYE GERLPEPENK AAFEDVDLSL RISQPNFHST KSDGNSTGTN FSHGSYEVPE  360
TGNAQPDSPN HPAVVPGFAM TPQHPHLWNA YPGYFPRIEE RGKEQRPEVG LRSLPGWAWH  420
MHGPTLLPLV TSAASSGFSN ATTVAALPPL PAPPPPPISH HLPFPPPAST GYFLRH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407466.10.0PREDICTED: floral homeotic protein APETALA 2-like
SwissprotQ8H4431e-129AP23_ORYSJ; APETALA2-like protein 3
TrEMBLM0TCN50.0M0TCN5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P34420_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-95related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]