PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P34460_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family BBR-BPC
Protein Properties Length: 184aa    MW: 20154.2 Da    PI: 10.4781
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P34460_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind2486.2e-7611184128301
              GAGA_bind 128 eeeklealpieeaaeeakekkkkk.krqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlng.vslDestlPvPvC 213
                            eee+ ++  ++  +  + +k++++ k++    +k+ + k++kk+ ++++kk+  +s  ++ k+ekk++d v ++   lD+s++PvPvC
  GSMUA_Achr6P34460_001  11 EEETDDKVATTPPPIPKLRKQHSStKKSGRVAAKVLRPKEPKKQLPNPTKKKGGSS--STGKREKKNQDSVAEQgTMLDISSVPVPVC 96 
                            44433333322222222233333303333445677788888886666655444444..78999999999877651667********** PP

              GAGA_bind 214 sCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            sCtG++rqCY+WG+GGWqS+CCtttiS yPLP+s++r+gaR+agrKmS ga+ klL++L+aeG+dls +vDLkdhWA+HGtnkfvtir
  GSMUA_Achr6P34460_001  97 SCTGVPRQCYRWGSGGWQSSCCTTTISEYPLPMSPTRPGARLAGRKMSIGAYGKLLQRLSAEGFDLSYAVDLKDHWARHGTNKFVTIR 184
                            ***************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.2E-631184IPR010409GAGA-binding transcriptional activator
PfamPF062172.8E-7011184IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MIDIQTMPIA EEETDDKVAT TPPPIPKLRK QHSSTKKSGR VAAKVLRPKE PKKQLPNPTK  60
KKGGSSSTGK REKKNQDSVA EQGTMLDISS VPVPVCSCTG VPRQCYRWGS GGWQSSCCTT  120
TISEYPLPMS PTRPGARLAG RKMSIGAYGK LLQRLSAEGF DLSYAVDLKD HWARHGTNKF  180
VTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407458.11e-133PREDICTED: protein BASIC PENTACYSTEINE7
RefseqXP_009407459.11e-133PREDICTED: protein BASIC PENTACYSTEINE7
RefseqXP_009407460.11e-133PREDICTED: protein BASIC PENTACYSTEINE7
RefseqXP_009407462.11e-133PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822866e-59BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLM0TCN91e-133M0TCN9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P34460_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2077767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-56basic pentacysteine 7