PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P34550_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

GRAS

Protein Properties

Length: 611aa MW: 67219.5 Da PI: 6.654

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P34550_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	290.5	4.5e-89	204	469	1	273
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfs 85 lv+lL++cA+ v+ gd e+a +lL + + + ++g + ++a yf+ AL +rl+ pps+t ++ ++ f+ GSMUA_Achr6P34550_001 204 LVHLLVSCADSVQRGDSEMAGSLLDQTRLAlaRVNTGFGIGKVAGYFVDALCRRLYP--------PPPSATGGGGsAANLEILYHHFY 283 68********************99888765778889**************9........444444433324455566778 PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173 e++P++kf+h+taNqaIlea++g++rvH++Df++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ +++l+e+g rLa++A++++ GSMUA_Achr6P34550_001 284 EACPYIKFAHFTANQAILEAFQGHDRVHVVDFNLMHGLQWPALIQALALRPGGPPLLRLTGIGAPSPDGRDALREVGLRLAELARSVQ 371 ************************************************************************************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 v+f f+ ++a+rle +++++++v pgEa+aVn vlqlhrll ++++ + d+vL+ + +l+Pk+v+vveqeadhn++sFl+rf+eal GSMUA_Achr6P34550_001 372 VRFAFRGVAATRLEHVRPWMFQVAPGEAVAVNTVLQLHRLLGDPAAEPI--DTVLEWIVGLKPKIVTVVEQEADHNKPSFLDRFTEAL 457 ****999**************************88877777..********************************* PP GRAS 262 eyysalfdslea 273 yys++fdsle GSMUA_Achr6P34550_001 458 FYYSTMFDSLEG 469 ********86 PP
2	GRAS	79.6	5.4e-25	471	544	301	374
GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +ga+r+erhe l++Wr+rl++aG+++v+l+++a kqa++ll ++++gy vee g+l+lgW++rpL+s+SaWr GSMUA_Achr6P34550_001 471 RGAARVERHEPLARWRDRLGRAGLRAVHLGSNAFKQASMLLTLFSGEGYCVEEVAGCLTLGWHSRPLISASAWR 544 5899*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	3.4E-15	85	155	No hit	No description
Pfam	PF12041	8.9E-22	85	149	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	48.128	178	524	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-86	204	469	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-22	471	544	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence Send to blast
MKYYSESVFA YPNFFGGGGR LYWRGVRETE ISLPWRKRRE KHQKSSPMSS SFRSDMGTDP 60 YDSVGDDRWI IASASDRGSS RGEIDSLLHG AGYRVRSTDL RHVAIGLEQL ESTMVGDQCV 120 ASSAEAIHYN PSDLTAWVDS MLSELAPDPH LLRHPLSTAA ANTWADPTQQ RPSLHRLENH 180 HQHRNVPAVS LQSMDEEEDA AIRLVHLLVS CADSVQRGDS EMAGSLLDQT RLALARVNTG 240 FGIGKVAGYF VDALCRRLYP PPPSATGGGG SAANLEILYH HFYEACPYIK FAHFTANQAI 300 LEAFQGHDRV HVVDFNLMHG LQWPALIQAL ALRPGGPPLL RLTGIGAPSP DGRDALREVG 360 LRLAELARSV QVRFAFRGVA ATRLEHVRPW MFQVAPGEAV AVNTVLQLHR LLGDPAAEPI 420 DTVLEWIVGL KPKIVTVVEQ EADHNKPSFL DRFTEALFYY STMFDSLEGG RGAARVERHE 480 PLARWRDRLG RAGLRAVHLG SNAFKQASML LTLFSGEGYC VEEVAGCLTL GWHSRPLISA 540 SAWRADDADD ASPPRDHQTL VLQDHSSSIT SGSNNVVDGD DHLHQHSVMR SHMGSSDRIN 600 DTGSGSSCSR V

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence Send to blast

MKYYSESVFA YPNFFGGGGR LYWRGVRETE ISLPWRKRRE KHQKSSPMSS SFRSDMGTDP  60
YDSVGDDRWI IASASDRGSS RGEIDSLLHG AGYRVRSTDL RHVAIGLEQL ESTMVGDQCV  120
ASSAEAIHYN PSDLTAWVDS MLSELAPDPH LLRHPLSTAA ANTWADPTQQ RPSLHRLENH  180
HQHRNVPAVS LQSMDEEEDA AIRLVHLLVS CADSVQRGDS EMAGSLLDQT RLALARVNTG  240
FGIGKVAGYF VDALCRRLYP PPPSATGGGG SAANLEILYH HFYEACPYIK FAHFTANQAI  300
LEAFQGHDRV HVVDFNLMHG LQWPALIQAL ALRPGGPPLL RLTGIGAPSP DGRDALREVG  360
LRLAELARSV QVRFAFRGVA ATRLEHVRPW MFQVAPGEAV AVNTVLQLHR LLGDPAAEPI  420
DTVLEWIVGL KPKIVTVVEQ EADHNKPSFL DRFTEALFYY STMFDSLEGG RGAARVERHE  480
PLARWRDRLG RAGLRAVHLG SNAFKQASML LTLFSGEGYC VEEVAGCLTL GWHSRPLISA  540
SAWRADDADD ASPPRDHQTL VLQDHSSSIT SGSNNVVDGD DHLHQHSVMR SHMGSSDRIN  600
DTGSGSSCSR V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	7e-55	211	543	26	378	Protein SCARECROW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	40	RKRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407441.1	0.0	PREDICTED: DELLA protein GAI-like
Swissprot	Q9LQT8	1e-141	GAI_ARATH; DELLA protein GAI
TrEMBL	M0TCP8	0.0	M0TCP8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P34550_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-125	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]