PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P34890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 271aa    MW: 29950.7 Da    PI: 9.0157
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P34890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000211941123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C k+F++  +L  H+r+H
  GSMUA_Achr6P34890_001 19 HRCKVCRKCFPTGRSLGGHMRSH 41
                           79********************9 PP
2zf-C2H211.60.00087153175123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C+ C+k+F ++  L  H  +H
  GSMUA_Achr6P34890_001 153 FECKSCNKVFDSHQALGGHRASH 175
                            89*************99999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.391941IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-81941No hitNo description
PfamPF139125.8E-71941IPR007087Zinc finger, C2H2
SMARTSM003550.0331941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SuperFamilySSF576672.77E-877104No hitNo description
PROSITE profilePS501579.51582109IPR007087Zinc finger, C2H2
SMARTSM003551.382104IPR015880Zinc finger, C2H2-like
PfamPF139120.008783106IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
SuperFamilySSF576678.54E-5151179No hitNo description
PROSITE profilePS5015710.429153180IPR007087Zinc finger, C2H2
PfamPF139123.0E-9153176IPR007087Zinc finger, C2H2
SMARTSM003550.25153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
PfamPF139121.9E-8192214IPR007087Zinc finger, C2H2
PROSITE profilePS501579.099192214IPR007087Zinc finger, C2H2
SMARTSM003550.77192214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280194214IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEGDRLLPPL PLPLASSKHR CKVCRKCFPT GRSLGGHMRS HFAVAANSSS EGDERQQSSY  60
SLRENPKKTW RLSDSGDGDG EMQCAECGNE FLSWRAFFGH MRCHSEKPSE ERGEQDGPCS  120
NVDGAINLML LSRGVRNWSR SCSETSDKNS AEFECKSCNK VFDSHQALGG HRASHKRMKG  180
CRGHRTHANK GHRCLICSRF FSSGQALGGH KRSHLVATAG SKRLWAAIRQ QPLEKPGVLD  240
LNLPADGSED LKSWWLGGNL KHEPLLGVIS N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407610.23e-88PREDICTED: zinc finger protein ZAT4-like
TrEMBLM0TCT20.0M0TCT2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P34890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1719549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-30C2H2-like zinc finger protein