PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P35500_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YB

Protein Properties

Length: 142aa MW: 14881.4 Da PI: 8.4413

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P35500_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	76	5.5e-24	23	66	2	45
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisf 45 req+r+lPianvsrimkk+lPanakiskdaketvqecvsefisf GSMUA_Achr6P35500_001 23 REQERLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISF 66 89*****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.4E-22	19	66	IPR009072	Histone-fold
SuperFamily	SSF47113	9.78E-19	25	99	IPR009072	Histone-fold
Pfam	PF00808	3.9E-14	28	66	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MADSDNESGG QSNSKAGSSA AAREQERLLP IANVSRIMKK ALPANAKISK DAKETVQECV 60 SEFISFDYVE PLKVYLQRFR EMEGEKAGGA TSSQSQHKDG SGGGSGGNGG GGSIYGSGMM 120 IRGQQMYGSG TPSALQPYQH RG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	1e-23	17	81	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT017830	5e-49	BT017830.1 Zea mays clone EL01N0508H10.c mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407345.1	3e-77	PREDICTED: nuclear transcription factor Y subunit B-3-like
Refseq	XP_009407346.1	3e-77	PREDICTED: nuclear transcription factor Y subunit B-3-like
Swissprot	O23310	3e-39	NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
Swissprot	Q69J40	1e-38	NFYBA_ORYSJ; Nuclear transcription factor Y subunit B-10
TrEMBL	M0TCZ3	3e-98	M0TCZ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P35500_001	5e-99	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18750	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	3e-41	nuclear factor Y, subunit B3

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Han X, et al. Overexpression of the poplar NF-YB7 transcription factor confers drought tolerance and improves water-use efficiency in Arabidopsis. J. Exp. Bot., 2013. 64(14): p. 4589-601 [PMID:24006421] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958] Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Hossain MA, et al. Identification of Novel Components of the Unfolded Protein Response in Arabidopsis. Front Plant Sci, 2016. 7: p. 650 [PMID:27242851] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]