PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P35600_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 242aa MW: 27950.6 Da PI: 8.3328

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P35600_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	103.8	9.3e-33	47	149	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW++Fvk+++L++gD+v F++ GSMUA_Achr6P35600_001 47 FEKPLTPSDVGKLNRLVIPKQHAEKYfpldGDSGEKGHLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSGFVKEKRLDAGDVVFFER 134 99*************************9555567889**********************************************8 PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++++ +++++ +r+ GSMUA_Achr6P35600_001 135 LRHRGDRFYISCRRR 149 776666679999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-43	41	156	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-33	43	153	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.69E-30	45	148	No hit	No description
Pfam	PF02362	9.0E-30	47	149	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	15.213	47	150	IPR003340	B3 DNA binding domain
SMART	SM01019	1.1E-25	47	150	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MSMNPLARHH PQAWTWEESP MINPRQYFHY TYRVGQEGVE HEREHMFEKP LTPSDVGKLN 60 RLVIPKQHAE KYFPLDGDSG EKGHLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSGFVK 120 EKRLDAGDVV FFERLRHRGD RFYISCRRRS EDESPPAACT LTMANAAAPW IPMCYTARAS 180 STTRLALRAD DEVDVVRSKA MGRPTHSKRL RLFGVNLDCV PELETQLVLA PETGQVHAHQ 240 NL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-49	42	149	3	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-49	42	149	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407334.1	0.0	PREDICTED: B3 domain-containing protein Os11g0156000-like
Refseq	XP_009407335.1	0.0	PREDICTED: B3 domain-containing protein Os11g0156000-like
Refseq	XP_018682792.1	0.0	PREDICTED: B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	2e-64	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M0TD03	0.0	M0TD03_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P35600_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	4e-54	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]