PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P36180_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 409aa    MW: 44967.8 Da    PI: 6.6142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P36180_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09113153247
                            HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS
                    HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 
                            + +h+++E+rRR++iN++ + Lrel+P++    ++K +Ka+ L +A
  GSMUA_Achr6P36180_001 113 KSKHSAMEQRRRNKINDR-QILRELIPHS----DQKRDKASFLLEA 153
                            578***************.*********9....8*******99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.1E-17111195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-10112196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7113153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.49E-12113176No hitNo description
SMARTSM003530.0039117177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MKPKTTILHQ YLLGVVFPSE LSSVFLFYSA AQWPATSFLL ARSTASVVRN RWAPEKDRSM  60
ETAASRSSRG FDEDDDDDQE FGKRDGSSFH RADLTTRVDG KGSGTDELPA TPKSKHSAME  120
QRRRNKINDR QILRELIPHS DQKRDKASFL LEAYTMRIMH NYIVIEYIRF LQEKAQKSES  180
SYPGWNQDNA KLMPWVKVYY RSFWKNAQNN NQIPVDGLSD PSPVIRNGSA PPASAFSGQF  240
DESNIPVAPV MLSNAQNPTE SDATAGLSYK IMETATGFAN SMPSQAQSHW LGASSPADCA  300
VNNEILNEHE ELIIDEGTIN ASATYSQGLL TALTQSLQSS GVDLSQASIS VQINLGKRAT  360
NKRAGATSAL SNSKNPDDPA PTNQAGGHSM MGNISEESSQ ATKRHKADN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683448.10.0PREDICTED: transcription factor BIM2-like isoform X1
TrEMBLM0TD610.0M0TD61_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P36180_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.14e-43BES1-interacting Myc-like protein 2