PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P36450_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 232aa MW: 26906.1 Da PI: 6.4069

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P36450_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.2e-18	37	89	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ F + +++ e++ eLA++lgL+ rq+ +WFqNrRa++k GSMUA_Achr6P36450_001 37 KKRLNLEQVRTLEKSFVMGKKLEPERKMELARSLGLQPRQIAIWFQNRRARWK 89 4568889*********************************************9 PP
2	HD-ZIP_I/II	123.6	9.6e-40	35	125	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 ekk+rl+ eqv++LE+sF + +kLeperK+elar+Lglqprq+a+WFqnrRAR+k kqlEkdy+ Lkr+++ +k++n++L+++++eL GSMUA_Achr6P36450_001 35 EKKKRLNLEQVRTLEKSFVMGKKLEPERKMELARSLGLQPRQIAIWFQNRRARWKIKQLEKDYDELKRQFEMMKAQNDALHAHNKELL 122 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +++ GSMUA_Achr6P36450_001 123 SQI 125 987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.08E-19	26	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.73	31	91	IPR001356	Homeobox domain
SMART	SM00389	1.2E-17	34	95	IPR001356	Homeobox domain
CDD	cd00086	7.67E-16	36	92	No hit	No description
Pfam	PF00046	2.4E-15	37	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.6E-19	39	98	IPR009057	Homeodomain-like
PRINTS	PR00031	1.6E-6	62	71	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-6	71	87	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.2E-13	91	131	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDAGRRSTSF SGMETCEELN LEDDISDDGL QPPGEKKKRL NLEQVRTLEK SFVMGKKLEP 60 ERKMELARSL GLQPRQIAIW FQNRRARWKI KQLEKDYDEL KRQFEMMKAQ NDALHAHNKE 120 LLSQILSLKG KDVSESINLN KETEGSCSMR SENSPDISLE ISREPMNHNP SDLHQQSRTF 180 FPSASQLLHS SSKSETPKVE SSVQRDNLCN MFYSTDDQSA FWAWSEQHNF HQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	91	RRARWKIKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407204.1	1e-169	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Refseq	XP_009407205.1	1e-169	PREDICTED: homeobox-leucine zipper protein ATHB-13-like
Swissprot	Q8LC03	2e-73	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	M0TD87	1e-171	M0TD87_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P36450_001	1e-172	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	5e-74	HD-ZIP family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]