PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 891aa    MW: 100077 Da    PI: 8.3266
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18347446198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d +g+ W +++++  +++s++yvl+ G     +a +L++gD+v+F++
  GSMUA_Achr7P00120_001 347 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLKVQDANGKDWVFQFRFwpNNNSRMYVLE-GVTPCIQAMQLQAGDTVTFSR 433
                            89**************************555567778***************9989999999***9.********************9 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++  e++l +++++
  GSMUA_Achr7P00120_001 434 ID-PEGKLIMGFRK 446
                            87.77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-29343449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-19344446IPR015300DNA-binding pseudobarrel domain
CDDcd100173.47E-22345446No hitNo description
PfamPF023628.0E-16347446IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293347448IPR003340B3 DNA binding domain
SMARTSM010191.1E-20347448IPR003340B3 DNA binding domain
PROSITE profilePS5105013.708571621IPR011124Zinc finger, CW-type
PfamPF074964.5E-11576618IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MSSPSSAAAT TAKICFNSQC KEPFPDTPPT RRKGWRLRSG EIAELCDRCS CMFEQGNFCE  60
TFHSDDGGWR NCETCGKRVH CGCIVSAPTY VFVDAGGVDC VACARKSLVT IVQLPLWLEH  120
IYNNMIILFL VWSAFFFSIN LSERKEFPAK SWKPLNGPFF GQWRQSPHMW NMTSAQSDLQ  180
QRLSYEFDRP NCIEKLTPGG RHSILAHEKK FENLSERPIT SNVARERYVN ANLDAHLNSC  240
VKPATSSAIK EDTSPLGLAA PFQSANDLKE PSRYSNQSQG QAGYPLSKQF YPQSMMDAEL  300
QTHIRNGKSR VDNRARSQLL PRYWPRITDK ELQQISGDSN SVITPLFEKM LSASDAGRIG  360
RLVLPKKCAE AYFPTISQPE GLPLKVQDAN GKDWVFQFRF WPNNNSRMYV LEGVTPCIQA  420
MQLQAGDTVT FSRIDPEGKL IMGFRKASSV SNEQDSQTLK SGNGFSTPPE AEQWNCTKLA  480
NEGLLQKDGL NARSSQGSRR KGGNLGSKSK RLRIENEDSM ELKVTWEEAQ QLLRPPPNCI  540
PSVVLVEGHE FEEYEEAPVL GKPTYFTTNQ SGENYQWAQC EDCSKWRRLP VDALLPSRWT  600
CSNNMSDPER SLCSAAQELS MEQLAELIPC KAGASKRSKV KVETDNIEVS DGLDTLANLA  660
ILGEGENLPP SQPTTKHPRH RPGCTCIVCI QPPSGKGPKH KQTCTCNVCL TVKRRFRTLM  720
LRREKRQSEK EAETARKQQK QQSNQSPEKA PGGSDPLKTD LGVNKTPRKA MTNDEGISDE  780
GLERRRASQS PLKAPQIDLN IQPEREEEPS PKSDSGSMMR LLQDAATSFK SSCVQFVQLQ  840
DGWACCSRIK ILLCWFKHHT QIMNFCSTLF VHCLEKEKKK DEVDKRPCKA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-643254542131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1712725KRRFRTLMLRREKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408672.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLM0TDF20.0M0TDF2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1