PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P00800_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 234aa    MW: 25461.2 Da    PI: 8.4735
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P00800_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-135097355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           + h ++Er+RR+++N++f  L  ++P +     kK +Ka++L  Av+Y+k+L+
  GSMUA_Achr7P00800_001 50 QEHIIAERNRREKLNQKFIALSAIIPGL-----KKADKASVLGDAVRYVKELE 97
                           6799************************.....9****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6124796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-105097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-1651107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1751109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-1152101No hitNo description
SMARTSM003534.3E-1353102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDPDASFPAP LLHVPGVSTK PKEEMRVPAA GGKHEAVLHR GATTVNAQAQ EHIIAERNRR  60
EKLNQKFIAL SAIIPGLKKA DKASVLGDAV RYVKELEARV KALEDQNVKR TVESVVLVKK  120
SQPSAADADA DDDGSSSDEN FDAQPSQKPF PEIEAKVSGK TVLMRIHCEN RKGVIVKILS  180
EIESINLTII NTNVMPFLGS SINVTVTAQA RPYFPEEFSM TVKDLVRKLG SALS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1452117976Transcription factor MYC2
5gnj_B3e-1452117976Transcription factor MYC2
5gnj_E3e-1452117976Transcription factor MYC2
5gnj_F3e-1452117976Transcription factor MYC2
5gnj_G3e-1452117976Transcription factor MYC2
5gnj_I3e-1452117976Transcription factor MYC2
5gnj_M3e-1452117976Transcription factor MYC2
5gnj_N3e-1452117976Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408580.11e-147PREDICTED: transcription factor bHLH18 isoform X2
TrEMBLM0TDM01e-169M0TDM0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P00800_0011e-170(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-46bHLH family protein