PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P00880_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 186aa MW: 20076 Da PI: 8.521

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P00880_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.8	3.8e-43	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C++dC++ap+fpa++p+kfanvhk+FGasnv+kll+++ ++r da+sslvyeA+ar+rdPvyG+v+ i++l++q++ GSMUA_Achr7P00880_001 13 PCAACKLLRRRCTQDCIFAPHFPADEPHKFANVHKVFGASNVSKLLQEIAVQHRGDAVSSLVYEANARVRDPVYGCVAAISTLHRQIQ 100 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+a+la+++++ GSMUA_Achr7P00880_001 101 ALQAQLAMAQAQ 112 ******9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.529	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.4E-43	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MKEVARKHNT VSPCAACKLL RRRCTQDCIF APHFPADEPH KFANVHKVFG ASNVSKLLQE 60 IAVQHRGDAV SSLVYEANAR VRDPVYGCVA AISTLHRQIQ ALQAQLAMAQ AQMVHLRMSH 120 AASLAHAGLG HSPMGAGSTS TGSSSMSPTH NQLMEPDTVN AKPVFALDMV VLDQTNLGSE 180 PPIWSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-45	12	114	10	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-45	12	114	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226046	7e-52	AC226046.1 Musa acuminata clone BAC MA4-72F16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408790.1	1e-137	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	6e-57	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	M0TDM8	1e-136	M0TDM8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P00880_001	1e-137	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-56	LOB domain-containing protein 4