PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P00950_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LSD

Protein Properties

Length: 179aa MW: 18780 Da PI: 8.4442

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P00950_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.8	1.5e-12	12	36	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr++L YPrGA sV+Ca+C t+ GSMUA_Achr7P00950_001 12 CSGCRNVLLYPRGAASVCCAICSTI 36 **********************997 PP
2	zf-LSD1	36.4	8.8e-12	51	75	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ GA+ VRC++C+t+ GSMUA_Achr7P00950_001 51 CGGCRTLLMHVHGATTVRCSCCNTI 75 ***********************97 PP
3	zf-LSD1	47	4.1e-15	89	113	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+ V GSMUA_Achr7P00950_001 89 CGHCHTTLMYPYGAPSVKCAICHYV 113 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.2E-12	9	39	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-10	12	36	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.5E-13	48	77	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-10	51	75	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.8E-10	87	116	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.5E-14	89	113	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000303	Biological Process	response to superoxide
GO:0001666	Biological Process	response to hypoxia
GO:0002240	Biological Process	response to molecule of oomycetes origin
GO:0009626	Biological Process	plant-type hypersensitive response
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	Biological Process	regulation of ethylene-activated signaling pathway
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010602	Biological Process	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	Biological Process	aerenchyma formation
GO:0043069	Biological Process	negative regulation of programmed cell death

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MISSGMQGQL VCSGCRNVLL YPRGAASVCC AICSTITTVP PPGMEMAQLI CGGCRTLLMH 60 VHGATTVRCS CCNTINITRP VNQVANVRCG HCHTTLMYPY GAPSVKCAIC HYVTNVGQMD 120 GMRLPVSTMH RLNGPTPAPP SASASQVQNT TVVVENPMSV DESGKLVSNL VVGVTTGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408561.1	1e-126	PREDICTED: protein LOL3-like isoform X1
Swissprot	Q6ASS2	7e-75	LOL3_ORYSJ; Protein LOL3
TrEMBL	M0TDN5	1e-125	M0TDN5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P00950_001	1e-126	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	6e-61	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]