PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P01070_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YA

Protein Properties

Length: 234aa MW: 25677.6 Da PI: 7.2513

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P01070_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	105.3	5.2e-33	104	160	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k rkpylheSRh hAlrR+Rg+gGrF GSMUA_Achr7P01070_001 104 EEPVYVNAKQYHGILRRRQSRAKAESENKL-AKLRKPYLHESRHLHALRRARGCGGRF 160 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-36	102	163	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.62	103	163	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.4E-27	105	160	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	7.1E-24	106	128	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	108	128	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	7.1E-24	137	160	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MTSSVQSLSD NSEPDEQHEQ EQSENQQQPY GAASLQSGIA TPLLGYMMPA GQFEVGQTMA 60 PTPYPYVDPY YGGIFAAYGG QHVIHPQLIG VNHSGVPLPT DAVEEPVYVN AKQYHGILRR 120 RQSRAKAESE NKLAKLRKPY LHESRHLHAL RRARGCGGRF LNSKLEANQQ NESKGNQLNE 180 IAANDKAQSS DIPGSGKCPI NQENTTKLSG NRAESTRVLV CEKTPLDIES KPTP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-21	103	164	1	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408550.1	1e-174	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_018683988.1	1e-174	PREDICTED: nuclear transcription factor Y subunit A-7-like
Refseq	XP_018683989.1	1e-174	PREDICTED: nuclear transcription factor Y subunit A-7-like
Swissprot	Q84JP1	2e-56	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	M0TDP7	1e-173	M0TDP7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P01070_001	1e-174	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	9e-55	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]