PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P01160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 382aa    MW: 41290.3 Da    PI: 8.081
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P01160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.52.8e-35681972124
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceae 76 
                             g+kdrhsk++T++g+RdRRvRls+++a++f+dLqd+LG+d++sk+ieWL+++a +ai el+ +             +    ++   +
  GSMUA_Achr7P01160_001  68 SGGKDRHSKVYTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAIEWLIKAATAAINELPPLdgfpkllqpsgddQ----MK---A 148
                            689*************************************************************77777655433220....11...1 PP

                    TCP  77 sssssasnsssgkaaksaakskksqksaasalnlak.esrakararare 124
                            + +++ + +++++  +++ +s++s++s+ s+++l++ esr++ +a a  
  GSMUA_Achr7P01160_001 149 DPVVEPAYNQQQHPPTKSGCSSNSDTSKGSVSSLSRsESRSNISAVAAG 197
                            2222222222234455555777778888878888887777766666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3469187IPR005333Transcription factor, TCP
PROSITE profilePS5136932.88670128IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEFEENNHAC KRSRVVGNGS QAAKIGRKEH QDEDEDDGER KGGGADVGRV APWQHHPSSR  60
IFRVSRASGG KDRHSKVYTA KGLRDRRVRL SVSTAIQFYD LQDRLGYDQP SKAIEWLIKA  120
ATAAINELPP LDGFPKLLQP SGDDQMKADP VVEPAYNQQQ HPPTKSGCSS NSDTSKGSVS  180
SLSRSESRSN ISAVAAGGEN PGHNCIQKQI STADYFGQAG LFTQSQKSHQ LPSGFSSQPH  240
FGNSSPMGIL PFNIAAAGDH QEMQQFPFLH EHFFPVSAVA ATGDHNLNFS ISSGLAGFNR  300
GTLQSNSPAQ LPQQQHHSHN HLQRLSSTVD GSNLQFFFGA AAGSAAAATN TENQFQSGFD  360
GRLQLCYGDG YRQSDLKGKG KS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2675129155Putative transcription factor PCF6
5zkt_B1e-2675129155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0037049e-47AP003704.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1048_C10.
GenBankAP0061639e-47AP006163.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:B1364A02.
GenBankAP0149639e-47AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126159e-47CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398327.10.0PREDICTED: transcription factor PCF6-like
RefseqXP_009398328.10.0PREDICTED: transcription factor PCF6-like
RefseqXP_009398329.10.0PREDICTED: transcription factor PCF6-like
TrEMBLM0TDQ60.0M0TDQ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P01160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-44TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2