PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P01330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 188aa    MW: 20675.7 Da    PI: 8.5923
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P01330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY217.15.3e-6731583170
                  YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                             +  +e++Cyv+CnfCntilavsvP +slf++v+vrCGhC +llsvn+    q l+ ++  ++       +   ++++++     ++ 
  GSMUA_Achr7P01330_001   3 AQLPPEHICYVHCNFCNTILAVSVPGNSLFSIVAVRCGHCCNLLSVNMGDLLQKLPLQDL-QTCN-----AAAAHDGRTMACGSPSKF 84 
                            66789***************************************************9994.3322.....222222222222222222 PP

                  YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            ++++    +++++++++ +    p +rPPekr rvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  GSMUA_Achr7P01330_001  85 NSTSL--FYSVPKDQQQIML---P-MRPPEKRHRVPSAYNRFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158
                            22222..2334667777666...3.8****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046903.2E-726158IPR006780YABBY protein
SuperFamilySSF470953.67E-8102151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.9E-5105152IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSAQLPPEHI CYVHCNFCNT ILAVSVPGNS LFSIVAVRCG HCCNLLSVNM GDLLQKLPLQ  60
DLQTCNAAAA HDGRTMACGS PSKFNSTSLF YSVPKDQQQI MLPMRPPEKR HRVPSAYNRF  120
IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLTI DGSKQAKNDE PAAATVTAPG  180
GQKAQSFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7952210.0KT795221.1 Musa acuminata isolate 61 YABBY2 (YABBY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408517.11e-140PREDICTED: axial regulator YABBY 5-like isoform X5
SwissprotQ10FZ77e-68YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0TDS31e-139M0TDS3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P01330_0011e-140(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-62YABBY family protein