PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P01650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 244aa    MW: 26764.3 Da    PI: 8.8095
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P01650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.7e-16140176135
                   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                            C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  GSMUA_Achr7P01650_001 140 CQNCGISEkmTPAMRRGPAGPRSLCNACGLMWANKGT 176
                            **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.16134IPR010399Tify domain
SMARTSM009792.0E-8234IPR010399Tify domain
PfamPF062007.0E-14333IPR010399Tify domain
PROSITE profilePS5101713.09668110IPR010402CCT domain
PfamPF062034.1E-1568109IPR010402CCT domain
SMARTSM004016.6E-9134188IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-10137186No hitNo description
CDDcd002024.33E-14139178No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14139178IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.5E-13140176IPR000679Zinc finger, GATA-type
PROSITE patternPS003440140167IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTSNQLTLLY QGEVYVFDSV TPEKVQAVLL LLGGCEVPSS ISSTTLPDAQ DEKGYDDILR  60
RANIPAKRIA SLIRFREKRK ERNFDKKIRY NVRKEVALRM QRRKGQFAGK ASLQEGATAS  120
SSCDPVQDAT LEDPPRESKC QNCGISEKMT PAMRRGPAGP RSLCNACGLM WANKGTLRSP  180
FKAKSVAPSL ANSSDHGEVI VSELGSDNKS IEHAPNNHEA VATSQIAKEG MQTDVQLTEV  240
ERQA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408474.10.0PREDICTED: GATA transcription factor 18-like
SwissprotA2XKR71e-94GAT18_ORYSI; GATA transcription factor 18
TrEMBLM0TDV50.0M0TDV5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P01650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-67ZIM-like 1