PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P02020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 346aa    MW: 37115.7 Da    PI: 8.5497
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P02020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.51.6e-4252127176
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                            +Cqv+gC++dl+ ak+y+ +hkvC +hskap+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  GSMUA_Achr7P02020_001  52 RCQVDGCKVDLTGAKTYYCKHKVCGMHSKAPKVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 127
                            6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3447114IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.90650127IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-3951129IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3253126IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEMGSSSVGV SGASSGSSDS LHGLKFGKKI YFEDGGGNSS KDALAPASQP PRCQVDGCKV  60
DLTGAKTYYC KHKVCGMHSK APKVTVAGLE QRFCQQCSRF HQLPEFDQGK RSCRRRLAGH  120
NERRRKPPPP GPFASRHCHH TPSFHEELGR ARSFPVDFSC PRFSTTTRDV WPTIAPGDWV  180
AGNHCLGVLY PLSSGAVVHG AHPCMHGHLE GPLYSITKPP LRDCLSGASD SSCALSLLST  240
QPWNHNTARN QVPTISVSSC LDGTPMARST VSDNCMTRSW GFIGHGGRPN PQNIQHIAGG  300
VGRVAEVGDG QISGMLELAR HGDGQCLHGS SGTAYDESGQ VMRWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-30531261184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408441.10.0PREDICTED: squamosa promoter-binding-like protein 17 isoform X1
SwissprotA3C0571e-78SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLM0TDZ20.0M0TDZ2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P02020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.14e-46squamosa promoter binding protein-like 15