PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P03640_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 166aa    MW: 17374.4 Da    PI: 8.3994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P03640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.6e-202473255
                    AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+ +++g
  GSMUA_Achr7P03640_001 24 HYRGVRKRP-WGRYAAEIRDPA---KKCRVWLGTFDTAEEAARAYDAAACRFRG 73
                           69*******.**********84...36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.5E-332481IPR001471AP2/ERF domain
CDDcd000181.82E-192481No hitNo description
PfamPF008471.3E-142473IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-232482IPR016177DNA-binding domain
SMARTSM003801.0E-392487IPR001471AP2/ERF domain
PROSITE profilePS5103224.1712481IPR001471AP2/ERF domain
PRINTSPR003672.0E-112536IPR001471AP2/ERF domain
PRINTSPR003672.0E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAPRAKACNP GGEGCGGGDR KGMHYRGVRK RPWGRYAAEI RDPAKKCRVW LGTFDTAEEA  60
ARAYDAAACR FRGPKAKTNF PCPAESLACA TGLAAGTAAP ASPSNSTIES STSSRRPAVG  120
PACGGVESDS DSSSVVDCPR SPTSVWPTDT IRFDLDLNLP PPPEFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-252186268ATERF1
3gcc_A1e-252186268ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3344091e-47DQ334409.1 Triticum aestivum ethylene-responsive factor-like transcription factor ERFL2a (ERFL2a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408242.12e-74PREDICTED: ethylene-responsive transcription factor 11-like
SwissprotQ9LW494e-34ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLM0TEF41e-115M0TEF4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P03640_0011e-116(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.19e-25erf domain protein 9