PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 361aa    MW: 39625.6 Da    PI: 12.0617
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019526223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           +C  Cg++Fs+ + L  H+r+H
  GSMUA_Achr7P04600_001  5 RCRLCGRRFSNGHALGGHMRSH 26
                           6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.242431IPR007087Zinc finger, C2H2
PfamPF139127.1E-6527IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDRPRCRLCG RRFSNGHALG GHMRSHRNSA ARPAMAQQAL PSPSASSSSF SFSSVAAGGS  60
STVVHEGESD AESSFRRRLS RPRRQVDAVA DAKPVSSVSD ASTEEDVARC LMLLSRDAWR  120
RNRNRHSPPD RGGRGRGTNA ARAGSSSGRI KLSAATARAT RGSRWNASRP PIPTLLTASP  180
SSSSALTAAG SSPPARRSAA TKDPIFPPPS LPPFTVRYRR SLLSSSKAAS STSTSQPHPK  240
KRQRSRRSPS QRNSRQSNRF SLLRLLSELK VAILEVIQGK FFRFQKKRQI ESDSYAFHCF  300
QASSIWVTSC SGHCNYSTAE KNHMNQKGKR RRNSEIFFVE LFVLESCRSK ASLSEKLALC  360
Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240245KRQRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0TEQ00.0M0TEQ0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04600_0010.0(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.13e-07C2H2-like zinc finger protein