PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P04630_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Protein Properties

Length: 206aa MW: 22625.5 Da PI: 9.9699

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P04630_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.6	1.4e-10	60	92	56	87
TTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS B3 56 sgryvltkGWkeFvkangLkegDfvvFkld.gr 87 s++yv+tkGW++Fv++++L +gD+v F ++ g+ GSMUA_Achr7P04630_001 60 SQSYVMTKGWSRFVREKQLAAGDTVSFLRSaGN 92 799************************966444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.7E-8	31	60	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.32E-15	33	89	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.20E-11	34	92	No hit	No description
Pfam	PF02362	7.0E-8	59	100	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.6E-9	61	101	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MEAFRVYDTS SSSPSVPPSE NGQAPAAPLL DREHMFDKVV TPSDVGKLNR LVIPKQYAES 60 QSYVMTKGWS RFVREKQLAA GDTVSFLRSA GNAGQDRLFI DLQHRPPRPI TQFSLPGRPV 120 GQWSGFIASS FYYRSACPRH VGVQADAGRS DMVSMPLVSG SVPVVFGTAK PKQLRLFGVN 180 LEWPDAEGSS NSQSPPSLQP ARWWST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-30	29	107	1	115	B3 domain-containing transcription factor NGA1
5os9_B	7e-30	29	107	1	115	B3 domain-containing transcription factor NGA1
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Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408115.1	1e-134	PREDICTED: B3 domain-containing transcription factor NGA1-like
Swissprot	O82799	6e-32	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	M0TEQ3	1e-148	M0TEQ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P04630_001	1e-149	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	8e-34	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]