PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04710_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LSD
Protein Properties Length: 141aa    MW: 14673.2 Da    PI: 8.0709
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04710_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD138.61.7e-122751125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           C+gCr+lL YP GA+sV+Ca+C +V
  GSMUA_Achr7P04710_001 27 CSGCRNLLLYPQGAKSVCCAVCRAV 51
                           ***********************98 PP
2zf-LSD145.61.1e-146690125
                zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                           CggC+tlL+Y rGA+sV+C++C+tV
  GSMUA_Achr7P04710_001 66 CGGCHTLLMYIRGASSVQCSCCHTV 90
                           ************************9 PP
3zf-LSD140.93.3e-13104128125
                zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                            Cg+C+ lL+Y +GA+sV+Ca+C++V
  GSMUA_Achr7P04710_001 104 CGNCQMLLMYQYGARSVKCAVCNFV 128
                            ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.6E-132454IPR005735Zinc finger, LSD1-type
SuperFamilySSF486956.98E-527125IPR011031Multihaem cytochrome
PfamPF069439.8E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010538.2E-156392IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-10101130IPR005735Zinc finger, LSD1-type
PfamPF069432.5E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MPVPLAPYPT PPAPLAPPNG GQSQLVCSGC RNLLLYPQGA KSVCCAVCRA VTTVPPPGTE  60
MAQLICGGCH TLLMYIRGAS SVQCSCCHTV NLALEANQVA HVNCGNCQML LMYQYGARSV  120
KCAVCNFVTS IGASPSTEQK A
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408105.13e-97PREDICTED: protein LSD1 isoform X4
SwissprotQ0J7V91e-78LSD1_ORYSJ; Protein LSD1
TrEMBLM0TER18e-96M0TER1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04710_0011e-96(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.11e-66lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]