PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P04720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 469aa    MW: 51253.8 Da    PI: 7.6324
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P04720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.78.8e-13312356554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  GSMUA_Achr7P04720_001 312 HVEAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 356
                            899**********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4269221IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.736307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-17311378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.1E-18312372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-14312357No hitNo description
PfamPF000102.8E-10312356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-15313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MNLWNDDNTS VMEAFLSSSA TVAAPDHHSF WPPLPPPPAS IPASSSSTTS STHSTVTSSA  60
PAHFSPDTLQ QRLHSLIEGA REKWTYAIFW QSSPPSGAAV LTWGDGYYRG CEEDKRKPLR  120
SGASSAAEQE HRKHWFFLVS MTQTFAPGAG HPGQAFLSGS PAWIAGADRM AAAPCERVRQ  180
AQAFGLRTMA CVPLESGVVE LGSTHDIFQS SEILSKVRLL FGQGSGRRPA AASWPTPQPA  240
AFLSSSADVV VAEVKSEGGC GGGNLFGADS DHSDLEASAR EVTSSAVMEP PEKRPKKRGR  300
KPANGREEPL DHVEAERQRR EKLNQRFYAL RSVVPNVSKM DKASLLADAV TYINELRSKM  360
QALESDKRKL QPAASNWPGR CSEVEVEVKI LGWEAMIRVQ CDRRCHPSAR LMIALRELDL  420
EVYYANVSVV KDLMIQQVTV KMTSRIYTQE QLTAALFSSV TADHPPHAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-44632213192Transcription factor MYC3
4rqw_B3e-44632213192Transcription factor MYC3
4rs9_A3e-44632213192Transcription factor MYC3
4yz6_A3e-44632213192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1292300KRPKKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00547DAPTransfer from AT5G46830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408104.11e-145PREDICTED: transcription factor MYC2-like
SwissprotQ336P51e-88MYC2_ORYSJ; Transcription factor MYC2
TrEMBLM0TER20.0M0TER2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P04720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.17e-89NACL-inducible gene 1
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]