PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P05010_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 274aa    MW: 30404.4 Da    PI: 10.1399
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P05010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.56.7e-42128204177
                            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            +Cq+egC++dls ak+yhrrhkvCe hska+vv+v gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+q
  GSMUA_Achr7P05010_001 128 RCQAEGCKTDLSGAKHYHRRHKVCELHSKATVVVVGGLQQRFCQQCSRFHVLAEFDKAKRSCRKRLADHNRRRRKPQ 204
                            6**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-34123190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.633126203IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.89E-40127206IPR004333Transcription factor, SBP-box
PfamPF031106.6E-32129202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MTNRFSSAGA FVPSMTSFAG MEGSSRKHYT WNWETNSHNL QNHAFFPCTP FLDSPPPLVP  60
TNSFHFFSPP PPEYPIGLVK MDDGGSGCGR IGLNLGHRTY FSSGDALAMD RLLARSSGMH  120
SLSSHQPRCQ AEGCKTDLSG AKHYHRRHKV CELHSKATVV VVGGLQQRFC QQCSRFHVLA  180
EFDKAKRSCR KRLADHNRRR RKPQLPPTTI TSPSKNTTTD ASEKSKQAQK TTGNNGDNHV  240
LLLLLRPASD TGASLVLMHL YHSLEQQTPL VPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-301292021184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1549271e-112DQ154927.1 Musa acuminata microsatellite mMaOCEN02 sequences.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408055.11e-177PREDICTED: squamosa promoter-binding-like protein 10 isoform X1
TrEMBLM0TEU10.0M0TEU1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P05010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-51squamosa promoter binding protein-like 8