PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P06880_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 259aa    MW: 27908.5 Da    PI: 8.3738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P06880_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.53.5e-14123167347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            +WT+eE+  ++ + ++lG+g+W+ I+r++ + Rt+ q+ s+ qky
  GSMUA_Achr7P06880_001 123 PWTEEEHRTFLAGLEKLGKGDWRGISREFVTSRTPTQVASHAQKY 167
                            7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.938116172IPR017930Myb domain
SuperFamilySSF466892.02E-17117172IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18119171IPR006447Myb domain, plants
SMARTSM007175.5E-10120170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-11123167IPR009057Homeodomain-like
CDDcd001673.33E-10123168No hitNo description
PfamPF002492.7E-11123167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEVHEGAPIL YTSQASMLRG VGKEMSQASC FKASTMEAVV EEHKREKVVT LFGVRILGTA  60
EGEEEEVMRK CWSMGCLASC TVASPCAAPG TGGSSQAYVS DSGLDQSLKR GSRRGQERKR  120
GIPWTEEEHR TFLAGLEKLG KGDWRGISRE FVTSRTPTQV ASHAQKYFLR KNNPGKRKRR  180
SSLFDVVTSD RVGISGSSTV GDDPDLLGVS SSYSSCQPLS SDAPLSDEPS DLELRISLPA  240
PHSLTKLATQ GAAGAIRVI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407831.10.0PREDICTED: transcription factor MYB1R1-like
TrEMBLM0TFC80.0M0TFC8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P06880_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-41MYB_related family protein