PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P06950_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 181aa MW: 19986.1 Da PI: 8.5633

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P06950_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	127	179	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++k+q +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ GSMUA_Achr7P06950_001 127 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 179 788899**********************************************9 PP
2	HD-ZIP_I/II	82.2	7.9e-27	127	179	1	53
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRAR GSMUA_Achr7P06950_001 127 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRAR 179 69**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	2.3E-31	1	104	IPR006712	HD-ZIP protein, N-terminal
SuperFamily	SSF46689	9.41E-18	115	179	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-18	116	177	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.86	123	181	IPR001356	Homeobox domain
SMART	SM00389	1.2E-10	125	181	IPR001356	Homeobox domain
Pfam	PF00046	7.3E-16	127	179	IPR001356	Homeobox domain
CDD	cd00086	1.76E-16	127	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MMGKDDLGLS LSLSSSSHHH RHLPLQLNLM PSSSASGRPP SPPFPCHQTT QWAVDARSLP 60 LLRGIDVNRA PSSGAVERDS EEDAGASSPN STLSSVSGKR AERDTHLGDE HDPDRGISDE 120 DDGDGSRKKL RLSKDQSAIL EESFKEHNTL NPKQKLALAK QLNLRPRQVE VWFQNRRARR 180 S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	SRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407821.1	1e-107	PREDICTED: homeobox-leucine zipper protein HAT4-like isoform X2
Swissprot	P46601	2e-55	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	M0TFD5	1e-127	M0TFD5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P06950_001	1e-128	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47370.1	2e-33	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]