PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P07130_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

YABBY

Protein Properties

Length: 213aa MW: 23914.4 Da PI: 8.8388

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P07130_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.1	2.2e-66	16	188	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvek 88 s seq+Cy CnfC+tilavsvP +slf++vtv+CG+Ct+llsvn + + +l++s+ l +e + ++l + ++ GSMUA_Achr7P07130_001 16 SPSEQLCYAYCNFCDTILAVSVPRSSLFMTVTVKCGKCTNLLSVNARGLLFPEVNQFRLGHSFLTLphhkLSDEIPCSPTSLLMDPTT 103 579****************************************9999999999999999987544456888888888888777666 PP YABBY 89 eesastsvssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++t+++++ + ++ +d+++ r+p ++P ekrqr+Psaynrfik+eiqrika nPdi+hreafsaaaknWahfP+ihfgl GSMUA_Achr7P07130_001 104 MNTTTTTTTNTLVasvNRGTDDKLRRTPVLNKPLEKRQRIPSAYNRFIKDEIQRIKAVNPDITHREAFSAAAKNWAHFPHIHFGL 188 66555555544335336667888999999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.7E-66	17	188	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-7	131	181	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-4	138	180	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MSSSSAAFSF DHFSSSPSEQ LCYAYCNFCD TILAVSVPRS SLFMTVTVKC GKCTNLLSVN 60 ARGLLFPEVN QFRLGHSFLT LPHHKLSDEI PCSPTSLLMD PTTMNTTTTT TTNTLVASVN 120 RGTDDKLRRT PVLNKPLEKR QRIPSAYNRF IKDEIQRIKA VNPDITHREA FSAAAKNWAH 180 FPHIHFGLMP DQLMKKASFR LQEGEDVLLK DSF

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProt	May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269\|PubMed:17351053}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by WOX3. {ECO:0000269\|PubMed:17351053}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408705.1	1e-159	PREDICTED: protein YABBY 5-like
Swissprot	Q01JG2	5e-75	YAB5_ORYSI; Protein YABBY 5
Swissprot	Q0JBF0	5e-75	YAB5_ORYSJ; Protein YABBY 5
TrEMBL	M0TFF3	1e-157	M0TFF3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P07130_001	1e-158	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	5e-63	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Khanday I, et al. Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties. Plant Physiol., 2016. 172(1): p. 372-88 [PMID:27457124]