PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P07280_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 193aa    MW: 21271 Da    PI: 5.186
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P07280_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.92e-141056354
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                           ++h+e+ErrRR+riN  +++Lr++lP+      +K +Ka+ L ++++++k+L
  GSMUA_Achr7P07280_001 10 KSHSEAERRRRERINGHLAKLRSMLPNT-----TKTDKASLLAEVIQHVKEL 56
                           79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.717756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-121056IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-41059No hitNo description
SuperFamilySSF474598.77E-151165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-141166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-131362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.49191173IPR002912ACT domain
Gene3DG3DSA:3.30.70.2605.6E-893168No hitNo description
CDDcd048736.99E-1193158No hitNo description
SuperFamilySSF550215.26E-793161No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MEAKAFAASK SHSEAERRRR ERINGHLAKL RSMLPNTTKT DKASLLAEVI QHVKELKRQT  60
LEIVEESPLP TEDDELTVDS ICDDDGKFIV RASLCCDDRP DLLPDLTSAL KTLKLRILKA  120
EITTVGGRVK NVLVITEEHN ASGYDDEQEL VAAIEDALKG VVEQTAEHDL SSSGGTKRQR  180
TTSLLSAVEH SSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11520ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407785.11e-134PREDICTED: transcription factor bHLH30-like
RefseqXP_018684163.11e-134PREDICTED: transcription factor bHLH30-like
SwissprotQ9S7Y12e-65BH030_ARATH; Transcription factor bHLH30
TrEMBLM0TFG81e-136M0TFG8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07280_0011e-137(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.14e-49basic helix-loop-helix 32
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]