PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P07430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WOX
Protein Properties Length: 143aa    MW: 16284.2 Da    PI: 10.7432
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P07430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1942103257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
               Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                            ++R+ +t++q+++L +l+++   r p+ae++++++++l    +++ ++V++WFqN++a+e++
  GSMUA_Achr7P07430_001  42 STRWIPTSDQIRILRDLYYNngLRSPNAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 103
                            58*****************8678*************************************97 PP
2Wus_type_Homeobox112.52.2e-3641105265
      Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                            ++tRW Pt++Qi+iL++ly+ +Glr+Pn+e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
  GSMUA_Achr7P07430_001  41 SSTRWIPTSDQIRILRDLYYnNGLRSPNAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 105
                            789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-1224105IPR009057Homeodomain-like
PROSITE profilePS5007110.04238104IPR001356Homeobox domain
SMARTSM003893.5E-540108IPR001356Homeobox domain
PfamPF000464.7E-1743103IPR001356Homeobox domain
CDDcd000863.02E-543105No hitNo description
Gene3DG3DSA:1.10.10.603.4E-744103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MEPQHYQQQQ QQQQLLQEDG NIGSCSSGGG GSKASFLCRQ SSTRWIPTSD QIRILRDLYY  60
NNGLRSPNAE QIQRISARLR QYGKIEGKNV FYWFQNHKAR ERQKKRLTVD ITATTSSSNK  120
SSAVVSPGTV NKRTFFSFTF GLS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6728181e-31EU672818.1 Ipomoea nil wuschel-like protein (WUS1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408701.16e-70PREDICTED: protein WUSCHEL
SwissprotQ6YBV14e-48WUS_ANTMA; Protein WUSCHEL
TrEMBLM0TFI31e-101M0TFI3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07430_0011e-102(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-38WOX family protein