PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P07490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 281aa    MW: 31056.1 Da    PI: 8.42
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P07490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05259281223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +Cp+C+k F+++  L+ H  + H
  GSMUA_Achr7P07490_001 259 VCPKCSKGFRDPVALVEHVERdH 281
                            7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.24E-13652No hitNo description
PROSITE profilePS510397.521059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.104.1E-111053IPR000058Zinc finger, AN1-type
PfamPF014283.2E-141351IPR000058Zinc finger, AN1-type
SMARTSM001541.9E-41352IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.02E-885142No hitNo description
Gene3DG3DSA:4.10.1110.104.0E-1091145IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.82698146IPR000058Zinc finger, AN1-type
PfamPF014287.0E-9101140IPR000058Zinc finger, AN1-type
SMARTSM001540.031101142IPR000058Zinc finger, AN1-type
SMARTSM003550.42221244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223244IPR007087Zinc finger, C2H2
SMARTSM003555.4258281IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912258281IPR007087Zinc finger, C2H2
PROSITE patternPS000280260281IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGTPEFPHLG KHCSVGDCRQ IDFLPFTCDR CNQVFCLQHR GYFNHQCPNA NQNDVTVLIC  60
PLCAKGVRLV LGEDPNVTWD SHVNTDCDPS NYQRATKKRR CPVPGCKEVL SLSNSVRCKD  120
CTEEHCLKHR FGPDHKCPGP RKPDSGFSFG GMFNKNQKGK SLQDRSSNSS SWWGSSLMKA  180
VSNIRASAES GMMKVNNVTT QALQKAKSGT AESSSGGELV EQCVQCRARF STVSALIEHV  240
ERSHQQSSRA GGNRVTIDVC PKCSKGFRDP VALVEHVERD H
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407756.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-142SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLM0TFI90.0M0TFI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-111C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]