PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P07650_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 227aa MW: 25337.4 Da PI: 9.9756

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P07650_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.3	9.3e-15	40	95	4	59
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr +r+ +NRe+ArrsR+RK++ + eLe v +L eN++L +l ++++++ + GSMUA_Achr7P07650_001 40 MKRMKRMLSNRESARRSRRRKQEHLNELEAQVSQLRVENSSLLRRLTNMNEKYNEA 95 79*****************************************9999998888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-14	37	101	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-13	39	93	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.507	39	102	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-11	41	93	No hit	No description
SuperFamily	SSF57959	9.64E-12	41	92	No hit	No description
PROSITE pattern	PS00036	0	44	59	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.2E-16	108	177	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MKNSTVSGKP VASGSTTHLS DDDELEEELD TTKNADGVRM KRMKRMLSNR ESARRSRRRK 60 QEHLNELEAQ VSQLRVENSS LLRRLTNMNE KYNEAAADNR VLKADVETLK AKVKMAEDTL 120 GRVTGKSPPL YRALSPISTI NMPCTGNSSS DATSDTAVVI QDDSTHFSQA LAHDKKGKRN 180 RAASMKRVAS LENLQNRICR RRSPCTPVQV DAVAWDPEAT LDNKNQE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	53	60	RRSRRRKQ
2	55	60	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds to the DNA specific sequence 5'-GCCACGT[AC]AG-3' found in the alpha-globulin gene promoter (PubMed:9049271, PubMed:11572990). Does not bind to promoters of other major storage genes such as glutelin, prolamin and albumin (PubMed:9049271). Binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:11572990, ECO:0000269\|PubMed:9049271}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407738.1	1e-138	PREDICTED: basic leucine zipper 63-like isoform X2
Refseq	XP_018684633.1	1e-138	PREDICTED: light-inducible protein CPRF2-like isoform X1
Swissprot	Q7X9A8	2e-47	RSBZ2_ORYSJ; bZIP transcription factor RISBZ2
TrEMBL	M0TFK5	1e-165	M0TFK5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P07650_001	1e-166	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3488	38	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.1	6e-38	bZIP family protein

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Yang D,Wu L,Hwang YS,Chen L,Huang N Expression of the REB transcriptional activator in rice grains improves the yield of recombinant proteins whose genes are controlled by a Reb-responsive promoter. Proc. Natl. Acad. Sci. U.S.A., 2001. 98(20): p. 11438-43 [PMID:11572990] Cheng S,Wang Z,Hong M Rice bZIP protein, REB, interacts with GCN4 motif in promoter of Waxy gene. Sci. China, C, Life Sci., 2002. 45(4): p. 352-60 [PMID:18759022]