PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P07830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 181aa    MW: 20024.8 Da    PI: 8.61
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P07830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY220.35.5e-6831543170
                  YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee 90 
                             +  +e+vCy++CnfCntilavsvP +s+f+vvtvrCGhC++llsvn+    q+ + ++         ++++ +++++ l+   +++ 
  GSMUA_Achr7P07830_001   3 AQIVPEHVCYIHCNFCNTILAVSVPGNSMFNVVTVRCGHCANLLSVNMGALLQAFPIQDF--------QAHNFGSQSNRLEIGSSSR- 81 
                            67789****************************************************996........5566666666655544433. PP

                  YABBY  91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                               +  s +++++++++ v     + rPPekrqrvPsaynrfi+eeiqrika+nPdish+eafsaaaknWahfP+ihfgl
  GSMUA_Achr7P07830_001  82 --CNRSSLYSMKDEQQQIV-----ALRPPEKRQRVPSAYNRFIREEIQRIKANNPDISHKEAFSAAAKNWAHFPHIHFGL 154
                            ..33334444455555444.....48****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.7E-727154IPR006780YABBY protein
SuperFamilySSF470952.49E-898147IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.4E-5102148IPR009071High mobility group box domain
CDDcd013906.82E-6108144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MSAQIVPEHV CYIHCNFCNT ILAVSVPGNS MFNVVTVRCG HCANLLSVNM GALLQAFPIQ  60
DFQAHNFGSQ SNRLEIGSSS RCNRSSLYSM KDEQQQIVAL RPPEKRQRVP SAYNRFIREE  120
IQRIKANNPD ISHKEAFSAA AKNWAHFPHI HFGLTLDGGK QVKLDDAIAA APGGEKAPGF  180
Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7952290.0KT795229.1 Musa acuminata isolate 69 YABBY2 (YABBY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407727.11e-135PREDICTED: protein YABBY 2-like isoform X1
SwissprotQ10FZ74e-77YAB2_ORYSJ; Protein YABBY 2
TrEMBLM0TFM31e-133M0TFM3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P07830_0011e-134(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-68YABBY family protein