PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P07860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NF-YA

Protein Properties

Length: 201aa MW: 22191 Da PI: 9.9522

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P07860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	102.9	3.1e-32	55	111	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQ+++Il+RRq+Rak+e+++kl +k rkpylheSRh hA+rR+RgsgGrF GSMUA_Achr7P07860_001 55 DGPIYVNAKQFHGILRRRQARAKAERQNKL-SKVRKPYLHESRHLHAMRRARGSGGRF 111 57**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.8E-36	53	114	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.666	54	114	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.1E-29	57	111	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	8.6E-25	57	79	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	59	79	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	8.6E-25	88	111	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MPSFPEHSGH VELELGHSMV YPNYSYGDQC YGLYATYGPQ SMHGRMLLPM NMTADGPIYV 60 NAKQFHGILR RRQARAKAER QNKLSKVRKP YLHESRHLHA MRRARGSGGR FLNTKKESSG 120 QVMNYGSKVK DSAPHHPTES PSSDIMKSDS GNLNSSSGGS SHLRSSFFRP LSSMIDGEQG 180 AAGMSNQWVS AADGCCDLLK V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-21	55	129	2	76	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407723.1	1e-133	PREDICTED: nuclear transcription factor Y subunit A-7
TrEMBL	M0TFM6	1e-148	M0TFM6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P07860_001	1e-148	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	2e-30	nuclear factor Y, subunit A10