PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P08020_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LSD

Protein Properties

Length: 179aa MW: 19138.4 Da PI: 8.4368

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P08020_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	48.5	1.4e-15	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YPrGA++VRCa+C+t+ GSMUA_Achr7P08020_001 7 CNGCRTILLYPRGATNVRCAICNTM 31 ***********************96 PP
2	zf-LSD1	40.4	5e-13	52	76	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+ GA++VRC++C t+ GSMUA_Achr7P08020_001 52 CYGCRTLLMYTSGATNVRCSCCGTI 76 99********************997 PP
3	zf-LSD1	41.5	2.2e-13	90	114	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L YP GApsV+Ca+C++V GSMUA_Achr7P08020_001 90 CGQCHTTLIYPCGAPSVKCAICHFV 114 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.6E-15	4	32	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.90.10.10	6.9E-4	5	113	No hit	No description
Pfam	PF06943	2.1E-13	7	30	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	1.15E-5	20	112	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	3.2E-15	49	78	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.2E-11	52	76	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.0E-9	88	115	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.5E-12	90	114	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MQSQLVCNGC RTILLYPRGA TNVRCAICNT MTPTLPAGID MAQQMEMAQI ICYGCRTLLM 60 YTSGATNVRC SCCGTINMAR PANQNAYLNC GQCHTTLIYP CGAPSVKCAI CHFVTNAGTM 120 RVPIPEAQRP NETIPMRPST SAPPSEAQNM TVVVENPMSV NQSGKLVSNV VVGVTTGKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009407702.1	1e-128	PREDICTED: protein LOL2-like
Swissprot	Q2QMB3	4e-68	LOL2_ORYSJ; Protein LOL2
TrEMBL	M0TFP2	1e-126	M0TFP2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P08020_001	1e-127	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	3e-59	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wu J, et al. OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa. Plant J., 2014. 80(6): p. 1118-30 [PMID:25353370]