PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P08150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 256aa    MW: 28771.5 Da    PI: 9.9431
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P08150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.3e-151462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           +g W+teEd +l+ +++q+G g +W + ++++g++R++k+c++rw++yl
  GSMUA_Achr7P08150_001 14 KGLWSTEEDAKLKSYIEQHGIGgSWISLPKKIGLRRCGKSCRLRWLNYL 62
                           678*****************999************************97 PP
2Myb_DNA-binding40.56.4e-1369111246
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            g  ++eEde++ ++    G++ W++I+  ++ gRt++++k++w++
  GSMUA_Achr7P08150_001  69 GEYSEEEDEIICRLYLTIGSR-WSLISTQLP-GRTDNDIKNYWNT 111
                            6789*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.079962IPR017930Myb domain
SuperFamilySSF466892.2E-2511109IPR009057Homeodomain-like
SMARTSM007178.5E-101364IPR001005SANT/Myb domain
PfamPF002494.7E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-231569IPR009057Homeodomain-like
CDDcd001674.64E-81762No hitNo description
PROSITE profilePS5129420.62763117IPR017930Myb domain
SMARTSM007174.2E-1267115IPR001005SANT/Myb domain
PfamPF002491.4E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370117IPR009057Homeodomain-like
CDDcd001673.65E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGLWSTE EDAKLKSYIE QHGIGGSWIS LPKKIGLRRC GKSCRLRWLN  60
YLRPNLKHGE YSEEEDEIIC RLYLTIGSRW SLISTQLPGR TDNDIKNYWN TRLKKKLLGK  120
QQKHHRQARR ATAPQQEVKI RENGILVQLP PSEAHRSASP GMADSHGETS GSSSQGHGRG  180
EQRDEHAGGG EHELGRDDPL HVPRLGARRA RDLYHAVMID VPFPENILLG DKKDCHVPLN  240
ATNAIKGGSN NVSRHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM9503388e-65AM950338.1 Musa acuminata subsp. burmannicoides microsatellite DNA, clone 7ZE05RM1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009407681.11e-125PREDICTED: transcription factor RAX3
RefseqXP_018684412.11e-125PREDICTED: transcription factor RAX3
SwissprotQ9M2Y95e-73RAX3_ARATH; Transcription factor RAX3
TrEMBLM0TFQ50.0M0TFQ5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P08150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.16e-68myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]