PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P08720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GATA
Protein Properties Length: 163aa    MW: 18169.3 Da    PI: 9.2423
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P08720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-162865136
                   GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36
                           C++Cg +   Tp+++rgpdg++tLCnaCGl ++ kg++
  GSMUA_Achr7P08720_001 28 CHHCGISAksTPMMHRGPDGPRTLCNACGLVWANKGTM 65
                           *****77777*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.2E-122275IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-112773No hitNo description
CDDcd002021.97E-132778No hitNo description
Gene3DG3DSA:3.30.50.101.0E-142768IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.9E-142865IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402855IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGGAATSDAN QNWCISVHQI FIVSIFQCHH CGISAKSTPM MHRGPDGPRT LCNACGLVWA  60
NKGTMRDLAK NPSPAIPNAL PAQKEGGLNK VMYHSHPTMW LNVEKYIYIL TSKVPLTRKR  120
RFRHIKGQCD MCRSVEILHC FHVSLLCQSY CLWAILAASS IAF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384454.19e-37PREDICTED: GATA transcription factor 20
SwissprotQ8GXL76e-25GAT24_ARATH; GATA transcription factor 24
TrEMBLM0TFW21e-119M0TFW2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P08720_0011e-120(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150391318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.13e-27ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]