PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P09080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 572aa    MW: 64558.9 Da    PI: 8.1656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P09080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-11333378454
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             h + Er+RR+++N++f+ Lr llP        K +Ka++L  + +Y++sL
  GSMUA_Achr7P09080_001 333 HHMISERKRREKLNESFDALRMLLPRG-----SKKDKASVLDNTRNYLNSL 378
                            68899********************95.....599*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.82E-13328383No hitNo description
PROSITE profilePS5088815.732329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-15329398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-9333378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-13333397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-13335384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDSIFLLSPD ARSRFLRTAG RVLGCSYICL WSHLYHPPSN YLTAMVGWHR DDDSTHPSSS  60
SGSPSRGLFD AYRRSICDIQ HSCVPGLAYK NGLPYFELGD ADLMDLASMR VQRQFYQEAG  120
IKTAFFLGCP SGEIELGMTS PSNTNMQINV QRVFSEDFIR QSQLGSEEFI QQAQLGQMLP  180
IPDQSRPSSS SSSSSLRSRS VGSAEHSSSG RSIMPDSALP RHVTMQAYGR YRNVLLPSAA  240
RDDAEITRAM IVVISSTSSS TTLMPFQTSE PAAGRSVGAF KPYCPALAPK SNANPSLHGQ  300
KMIKKVIMLL TTMNLTRFEA PMQDARTSSN QMHHMISERK RREKLNESFD ALRMLLPRGS  360
KKDKASVLDN TRNYLNSLRT QISELDERNR LLEVQLRHQR ENEEDGDPNE AEEEDGDPNE  420
IVQVRITWSS ESTSETQRIN IGVTVRVECN AIDMILNVLE RLKRMRGATL VSVETSTRSS  480
QTNVCMKASL TLQVKSGDCD EEAFKEAVVE AAYSALAAGV CERRWRRFRK VGNEFYAERL  540
GERFFVSVCV PQRWRERERE RCRPHTLWWL SF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342ERKRRE
2338343RKRREK
3552562RWRERERERCR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409598.10.0PREDICTED: putative transcription factor bHLH041
TrEMBLM0TFZ60.0M0TFZ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P09080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-33bHLH family protein