PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P09240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 243aa    MW: 26802.7 Da    PI: 9.9966
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P09240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29e-091347339
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                            W++ E  ++ +a +++G++ Wk++a+t++ +++   
  GSMUA_Achr7P09240_001 13 QWSKVEVVQFFEAYHKYGKD-WKKVAATLP-NKSSDA 47
                           6*****************99.*********.998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.77E-10959IPR009057Homeodomain-like
SMARTSM007175.6E-41058IPR001005SANT/Myb domain
PfamPF002496.6E-71351IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-51349IPR009057Homeodomain-like
CDDcd001675.58E-61456No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MQKRSLSDML GSQWSKVEVV QFFEAYHKYG KDWKKVAATL PNKSSDAVEA LYNMNKAYLS  60
LPEGSANATG LIAMMIDHYN ILEGGDSDQE NYRFLRTYTR PQKHGRVSQI VLPKGSKGLV  120
SLQKQSIPSS SGCMPSLRKI HFAGKYYSGG KIRCVGKRTP RFPVAFLSEN IIRYNLTSSN  180
KQCSKSKAEV FADEGMHLAA LALIEASQIF GSPLGSQSRD RVNEQIGSPP VLSGDSKVCP  240
IQS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684194.11e-161PREDICTED: protein ALWAYS EARLY 2-like isoform X1
RefseqXP_018684195.11e-161PREDICTED: protein ALWAYS EARLY 2-like isoform X2
RefseqXP_018684196.11e-161PREDICTED: protein ALWAYS EARLY 2-like isoform X3
RefseqXP_018684197.11e-161PREDICTED: protein ALWAYS EARLY 2-like isoform X4
TrEMBLM0TG120.0M0TG12_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P09240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62302331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.21e-49DNA binding