PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P09510_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 438aa MW: 49719.7 Da PI: 7.3578

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P09510_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.2	1.3e-35	44	186	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra... 77 lp+G++F+Ptd+elv e+L++kv++++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ GSMUA_Achr7P09510_001 44 LPAGVKFDPTDQELV-EHLEAKVKAEDltshplIDEFIPtIEGDdGICYTHPEKLP-GVRRDGLSKHFFHRPSKAYTTGTRKRRKiqs 129 799**********.99****96665443332223555545******.566677799**************8566 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l GSMUA_Achr7P09510_001 130 tcdlqRGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 186 6555433778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.32E-38	39	205	IPR003441	NAC domain
PROSITE profile	PS51005	32.794	44	205	IPR003441	NAC domain
Pfam	PF02365	1.5E-16	45	186	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
MNTSPKVSTS SLIDAKLVQH RVSVSKQCPG CGHKLDRKPD WVGLPAGVKF DPTDQELVEH 60 LEAKVKAEDL TSHPLIDEFI PTIEGDDGIC YTHPEKLPGV RRDGLSKHFF HRPSKAYTTG 120 TRKRRKIQST CDLQRGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK HRKPEKTNWV 180 MHQYHLGESE EEKEGELVVS KIFFQTQPRQ CTWSDKSSTT AAATAEGMDQ IRDSGGASCS 240 SDLVSKRDEH SYSSMEMHQH LMKPDNFSFA PFRESFNEVI NFSTSNSCLL SNSSIRELGE 300 EPKARDEHSE HEHLVGSPHH QVAQEHQHLQ QLQVVPTAAF HITRPMHPIP AIVSTHPHRQ 360 TSMVLEDPYQ VSRILLQSDK FQQLELQQKL DHRSASGLEE LVMSCTSART NETSIAHSQE 420 TEWHFPFWQS DNPNHHGG

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

MNTSPKVSTS SLIDAKLVQH RVSVSKQCPG CGHKLDRKPD WVGLPAGVKF DPTDQELVEH  60
LEAKVKAEDL TSHPLIDEFI PTIEGDDGIC YTHPEKLPGV RRDGLSKHFF HRPSKAYTTG  120
TRKRRKIQST CDLQRGETRW HKTGKTRPVM VNGKQKGCKK ILVLYTNFGK HRKPEKTNWV  180
MHQYHLGESE EEKEGELVVS KIFFQTQPRQ CTWSDKSSTT AAATAEGMDQ IRDSGGASCS  240
SDLVSKRDEH SYSSMEMHQH LMKPDNFSFA PFRESFNEVI NFSTSNSCLL SNSSIRELGE  300
EPKARDEHSE HEHLVGSPHH QVAQEHQHLQ QLQVVPTAAF HITRPMHPIP AIVSTHPHRQ  360
TSMVLEDPYQ VSRILLQSDK FQQLELQQKL DHRSASGLEE LVMSCTSART NETSIAHSQE  420
TEWHFPFWQS DNPNHHGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-12	42	186	13	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408903.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Refseq	XP_009408905.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Refseq	XP_018684422.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Refseq	XP_018684423.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Refseq	XP_018684424.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Refseq	XP_018684425.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Refseq	XP_018684426.1	0.0	PREDICTED: NAC domain-containing protein 55-like
Swissprot	Q9M0F8	1e-126	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	M0TG39	0.0	M0TG39_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P09510_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-115	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]