PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P09680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 202aa    MW: 22357.1 Da    PI: 5.0829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P09680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.1e-3192149158
                            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                            ldDg++WrKYG+K+vk+s++pr+YYrC+++gC vkk+ver+++dp++v+++Yeg Hnh
  GSMUA_Achr7P09680_001  92 LDDGFKWRKYGKKSVKNSPNPRNYYRCSTEGCGVKKRVERDRDDPRFVITIYEGVHNH 149
                            59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-3281151IPR003657WRKY domain
SuperFamilySSF1182903.53E-2784150IPR003657WRKY domain
PROSITE profilePS5081131.187152IPR003657WRKY domain
SMARTSM007741.4E-3592151IPR003657WRKY domain
PfamPF031068.4E-2593149IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MATAALDIGG LSCSPVFLFD DAPKLCTTDE FDVSEYVAVF DESSVTESSA VAGDVYCPTD  60
DTMMSCRNET KRMKVGDGCR IGFRTKSEVE ILDDGFKWRK YGKKSVKNSP NPRNYYRCST  120
EGCGVKKRVE RDRDDPRFVI TIYEGVHNHI SPCTLCYNYA HLPLAPSASA PWGRAMAGAP  180
TISSSSSTCT AQWLESFFQD DM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2782153778Probable WRKY transcription factor 4
2lex_A3e-2782153778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009408926.11e-151PREDICTED: probable WRKY transcription factor 50 isoform X1
SwissprotQ8VWQ56e-39WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLM0TG561e-149M0TG56_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P09680_0011e-150(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-41WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]