PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P10720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 299aa    MW: 32803.8 Da    PI: 4.9028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P10720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18127176255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+++AeIrd +     r  r++lg+f taeeAak ++ a+ +l+g
  GSMUA_Achr7P10720_001 127 RFRGVRRRP-WGKFAAEIRDpW-----RrVRVWLGTFNTAEEAAKVYDSAAIQLRG 176
                            79*******.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-28126183No hitNo description
SuperFamilySSF541711.83E-20127184IPR016177DNA-binding domain
SMARTSM003802.6E-32127190IPR001471AP2/ERF domain
PfamPF008471.8E-11127176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28127184IPR001471AP2/ERF domain
PROSITE profilePS5103222.734127184IPR001471AP2/ERF domain
PRINTSPR003678.4E-10128139IPR001471AP2/ERF domain
PRINTSPR003678.4E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MASGVKRSEA CGFIPLLLRA MEATPSLPVV RGEHVDVIRK PLSSLPAPRT VRFFCDDFDA  60
TDSSGDDDEL PCQSRRVRRY VQEIRFEARP SSAGRSNKGM KAVPARKRKA PVAGEGAAGE  120
GDGSVKRFRG VRRRPWGKFA AEIRDPWRRV RVWLGTFNTA EEAAKVYDSA AIQLRGPSAT  180
TNFSRPTAAA ASPPKKNRSD NNLASVSDAC DSSDDLLKEL GDFPPFQEVP ALFDEFLDTW  240
DSEPSYFGDS APIGNLAEEM TDALIGPKLD LDFLSSTWQN ADYFEDIGDL FPIDALPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-181271831471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424211e-51EU942421.1 Zea mays clone 1496106 mRNA sequence.
GenBankKJ7275161e-51KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409040.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
RefseqXP_018684297.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
RefseqXP_018684298.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLM0TGG00.0M0TGG0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P10720_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-31cytokinin response factor 2