PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P10740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 251aa    MW: 27758.8 Da    PI: 9.3228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P10740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.2e-1367113354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            ++h e+ErrRR+riN  +++Lr+++P+      +Kl+Ka+ L ++++++k+L
  GSMUA_Achr7P10740_001  67 KSHCEAERRRRERINRHLATLRSMVPST-----EKLDKAALLAEVINHMKEL 113
                            58*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.87264113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1167113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-1368115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1368116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.88E-6151219No hitNo description
Gene3DG3DSA:3.30.70.2605.0E-4151220No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGSVPVRDVR DFEGFSGGFG SGFGPTLASS SSLELDSDGR ELVKVSRLGK MKGGVGVSDA  60
KGVMALKSHC EAERRRRERI NRHLATLRSM VPSTEKLDKA ALLAEVINHM KELKTNAVEI  120
SKCYSIPSDI DEVRVEVEDV MKDGNFLVKA SLCCEDRPEL FADLRLTLQS LQLKTVRAEI  180
STLGGRIKNV LVMTSDRNYN NAERQLCMTS IRQALKSILD SVNSQADFLP RPSFSNKRRR  240
ISLFESSSSL S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17277ERRRRE
2236240KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018684150.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_018684151.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_018684152.10.0PREDICTED: transcription factor bHLH30-like
TrEMBLM0TGG20.0M0TGG2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P10740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-40bHLH family protein