PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P11950_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 214aa    MW: 22880.3 Da    PI: 8.7394
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P11950_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000236183123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C++C + F ++  L  H++ H
  GSMUA_Achr7P11950_001 61 YECQYCYREFANSQALGGHQNAH 83
                           99******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.63E-65888No hitNo description
Gene3DG3DSA:3.30.160.603.7E-45987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-56185IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.6766188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MSGVKSTSKK SSSSSGLKLF GFHVSEEEET GLRSDSSSSS TTTTVTATSP GGGDCADGRK  60
YECQYCYREF ANSQALGGHQ NAHKKERQQL KRAQMMLQQQ HDHLGGCFWP PTFVLPLRRN  120
PGSAGWEYFS RAAPTFHASR ACAFPFSSAL RSQPVHPSAF LYSAAGSGPR ISEESANSFG  180
RFPVTAPVAA DADSAKSGDS FGLDLQLRLA PTGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666091e-35AK366609.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2044N04.
GenBankAK3747701e-35AK374770.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3075P23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409648.11e-157PREDICTED: zinc finger protein 6-like
TrEMBLM0TGT31e-155M0TGT3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P11950_0011e-156(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP795124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.12e-12zinc finger protein 8