PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P12070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 172aa    MW: 19935 Da    PI: 10.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P12070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.2e-091064255
                           HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                    HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                           r+  + +E+ RR +++s   +L +++Pk   ++sk  l+  + L +A+ YIk+L+
  GSMUA_Achr7P12070_001 10 RMERKTVEKYRRMHMKSLCLQLSSIIPKEHMTTSKNgLTQNDSLDQATSYIKKLE 64
                           778899**********************656888888***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-9876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.832863IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-101073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-51064IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MRRGGRTDSR MERKTVEKYR RMHMKSLCLQ LSSIIPKEHM TTSKNGLTQN DSLDQATSYI  60
KKLEERIENL KQRRLTWAMT ETNGVTVGFQ LPILEVRHRD MDLEILLISR VSKRFMFHEV  120
INVLEEEGAD VVNASFSTVG DKIFHTIHSK AFSSRIGLEA SRVSERLKDL VQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409207.11e-124PREDICTED: uncharacterized protein LOC103991458
TrEMBLM0TGU51e-123M0TGU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P12070_0011e-124(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.14e-28bHLH family protein