PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P12610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27130.1 Da    PI: 10.0241
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P12610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.65e-261059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n+  rqvtfskRrng+lKKA+EL +LCdaev v++fs tg+ly+y+s
  GSMUA_Achr7P12610_001 10 RIDNSASRQVTFSKRRNGLLKKAKELAILCDAEVGVVVFSGTGRLYDYAS 59
                           8***********************************************86 PP
2K-box80.63.7e-27821711099
                  K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                            ++++ + +q+e++ L++++++Lq+++R+l+Ge+L+ Ls+k+L++Le+qLe  l+ +R++K++ll+++i+el +k   +++en++L +k
  GSMUA_Achr7P12610_001  82 TASEIKFWQREATSLRQQLHKLQETHRQLMGEELSGLSVKDLENLENQLEMRLRGVRKTKEQLLINEIQELNQKGSLIHQENMELYQK 169
                            567899*********************************************************************************9 PP

                  K-box  98 le 99 
                            ++
  GSMUA_Achr7P12610_001 170 IN 171
                            85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
CDDcd002652.53E-41277No hitNo description
SuperFamilySSF554551.7E-30282IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2684170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.54986176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSASRQVT FSKRRNGLLK KAKELAILCD AEVGVVVFSG TGRLYDYAST  60
SMKSVIERYT RAKAENHLIL DTASEIKFWQ REATSLRQQL HKLQETHRQL MGEELSGLSV  120
KDLENLENQL EMRLRGVRKT KEQLLINEIQ ELNQKGSLIH QENMELYQKI NIMHQENREL  180
HKKVYAPTEE NDPNRNSVIP HSFHITKEVN ALIHLGLRQQ HQHGEELKLG APKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20170170MEF2C
5f28_B1e-20170170MEF2C
5f28_C1e-20170170MEF2C
5f28_D1e-20170170MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132140RLRGVRKTK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409268.11e-172PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP491e-108MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLM0TGZ91e-171M0TGZ9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P12610_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-100AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]