PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P12740_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 228aa MW: 25875.6 Da PI: 4.57

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P12740_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.6e-18	49	102	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe ++++ e++ +LA++l L+ rqV vWFqNrRa++k GSMUA_Achr7P12740_001 49 KKRRLSVEQVRALEKNFEVDNKLEPERKVRLAQELVLQPRQVAVWFQNRRARWK 102 556899***********************************************9 PP
2	HD-ZIP_I/II	131	4.5e-42	49	140	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls eqv++LE++Fe ++kLeperKv+la+eL lqprqvavWFqnrRAR+ktkqlE+dy+aLk++ydal+ + ++L++++e+L + GSMUA_Achr7P12740_001 49 KKRRLSVEQVRALEKNFEVDNKLEPERKVRLAQELVLQPRQVAVWFQNRRARWKTKQLEHDYAALKASYDALRLDYDALRRDNESLIA 136 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 e+ke GSMUA_Achr7P12740_001 137 EIKE 140 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-19	37	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	44	104	IPR001356	Homeobox domain
SMART	SM00389	1.5E-16	47	108	IPR001356	Homeobox domain
CDD	cd00086	7.42E-16	49	105	No hit	No description
Pfam	PF00046	2.6E-15	49	102	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-19	51	111	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	79	102	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.3E-18	104	145	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MKRSLSYSDH PSMPAGEERG MFQSFMDGLE DDDGVEQEEM CNGGERGSKK RRLSVEQVRA 60 LEKNFEVDNK LEPERKVRLA QELVLQPRQV AVWFQNRRAR WKTKQLEHDY AALKASYDAL 120 RLDYDALRRD NESLIAEIKE LKTKLTASDK EEAMTSKAEE KAAAPEEPLA KDGSSDSDSS 180 AVLLNDQDSP RGRSSSASTE ELLGGDEPCG SSFFSYDQTP FPSWYYWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	104	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.
UniProt	Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269\|PubMed:10732669, ECO:0000269\|PubMed:18049796}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.
UniProt	INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269\|PubMed:17999151, ECO:0000269\|PubMed:18049796}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409283.1	1e-143	PREDICTED: homeobox-leucine zipper protein HOX4-like isoform X1
Swissprot	Q6K498	7e-58	HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
Swissprot	Q9XH37	7e-58	HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBL	M0TH12	1e-166	M0TH12_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P12740_001	1e-167	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3009	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65310.1	9e-51	homeobox protein 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]