PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P12790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 327aa    MW: 35923.4 Da    PI: 6.6746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P12790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.4e-14124175155
                            CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +r+ah ++Er+RR++iN+ ++ Lr+l+P +   + ++ + a+i+  A++++k+L+
  GSMUA_Achr7P12790_001 124 QRMAHIAVERNRRKQINEYLAVLRSLMPAS---YVQRGDQASIVGGAIDFVKQLE 175
                            79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.04E-13122179No hitNo description
Gene3DG3DSA:4.10.280.108.7E-14123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16123194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.288123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALEAVVFPQ DLFGCDVREL HKKGGEVWRY DFGGVAEDGK VCGSAGDQDG RGLKQERKVE  60
DVTRGPWDTS SSSIVQASAD GHVNSSSPET GTEDAFNVSP GLAARRRKKR RLKSFKNQEE  120
VENQRMAHIA VERNRRKQIN EYLAVLRSLM PASYVQRGDQ ASIVGGAIDF VKQLEKFVHS  180
LEAHKRVKQR SSSSPSPFAD FFSFPQYSSN SPCCAKSAAD DSAGEPAVEN HSPVVAEVEV  240
TMVETHANLK VLSTRRPKQL QNMVVGLQSL HLTTLHLNVT TIADMVLYSF SLKVEDECLL  300
TSADEIATAV HQMVAKIQQD AAFDCAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109RRRKKR
2104110RRRKKRR
3104111RRRKKRRL
4107112KKRRLK
5124135RMAHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409290.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9C7T43e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLM0TH160.0M0TH16_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P12790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]