PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P13750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 200aa    MW: 22308 Da    PI: 9.3108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P13750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.2e-091162455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                             +++E++RR +++  +++L +llP + ++ s   +    L +A++YIk +q
  GSMUA_Achr7P13750_001 11 DRKIVEKNRRIHMKALYAKLVSLLPASASQESVAATLPNQLDEAINYIKAMQ 62
                           5689**********************55899999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.12E-6566No hitNo description
PROSITE profilePS5088810.283761IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.06E-9976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-10973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-51262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEASRVSARL DRKIVEKNRR IHMKALYAKL VSLLPASASQ ESVAATLPNQ LDEAINYIKA  60
MQETLERMKK RKKLLMWCAG IGKDEENTCL RVPKMEVQDL NSGLRVIAIS STCDHRLKFS  120
EAVRIVEAAE GNEIITASYA VVGDAAFHTI ESMVASILLP AVVILVSCSS LTTVPLRTGN  180
WQWNWRSRQG VREPKECIPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16872KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409379.11e-108PREDICTED: uncharacterized protein LOC103991605
TrEMBLM0THB21e-144M0THB2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P13750_0011e-145(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119872938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-28bHLH family protein