PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr7P14200_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 287aa    MW: 30934.5 Da    PI: 5.8445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr7P14200_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.8e-18110159255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+++AeIrd +     r  r++lg+f taeeAak ++ a+ +l+g
  GSMUA_Achr7P14200_001 110 RFRGVRRRP-WGKYAAEIRDpF-----RrVRVWLGTFNTAEEAAKVYDSAAIQLRG 159
                            69*******.**********66.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.85E-28109166No hitNo description
PfamPF008478.2E-12110159IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-20110167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-28110167IPR001471AP2/ERF domain
SMARTSM003803.1E-32110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.09110167IPR001471AP2/ERF domain
PRINTSPR003676.7E-10111122IPR001471AP2/ERF domain
PRINTSPR003676.7E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDATFLVPVK RTEHVVVTTK PLSARPRTVR VFCDDYDATD SSGDESECCH SRRRVRRYVQ  60
EVRFEARPDR GGAQAVAEAG KSKAAKGGGA VKKRKGGPFA AASGDGSVQR FRGVRRRPWG  120
KYAAEIRDPF RRVRVWLGTF NTAEEAAKVY DSAAIQLRGP DATTNFARPT ATAAAATTRM  180
TPPPPPPKRN LSDNNLTSIG GATSPSVQLG GFLPLDDEES LFDGVLGFFD DDPSPIGYLA  240
EDVSDAFLLG SGLDDVDLHA STSTWQGADE FFEGIGDLFP IEPLPAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-181101661471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009409432.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
SwissprotQ9SUE35e-38CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBLM0THF70.0M0THF7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr7P14200_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-26cytokinin response factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zwack PJ,Compton MA,Adams CI,Rashotte AM
    Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance.
    Plant Cell Rep., 2016. 35(3): p. 573-84
    [PMID:26650835]
  3. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]