PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr7P14860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 190aa MW: 22045.9 Da PI: 8.7555

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr7P14860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.6e-20	21	82	1	57
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++ R+++t+eq+++L +lF++ r+ps+++++ ++++l +++ ++V++WFqN++a+e++ GSMUA_Achr7P14860_001 21 KCGRWNPTAEQVKVLTDLFRSgLRTPSTDQIQMISAHLsafgKIESKNVFYWFQNHKARERH 82 568***************99************************************95 PP
2	Wus_type_Homeobox	110.6	8.9e-36	21	83	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++ RW+Pt+eQ+k+L++l++sGlrtP++++iq i+a+L+++Gkie+kNVfyWFQN+kaRer++ GSMUA_Achr7P14860_001 21 KCGRWNPTAEQVKVLTDLFRSGLRTPSTDQIQMISAHLSAFGKIESKNVFYWFQNHKARERHH 83 578**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.106	18	83	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.74E-11	20	86	IPR009057	Homeodomain-like
SMART	SM00389	3.4E-4	20	87	IPR001356	Homeobox domain
Pfam	PF00046	3.7E-17	22	82	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.1E-7	24	81	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0010078	Biological Process	maintenance of root meristem identity
GO:1902459	Biological Process	positive regulation of stem cell population maintenance
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MGEGERAAES GGFSATRAGA KCGRWNPTAE QVKVLTDLFR SGLRTPSTDQ IQMISAHLSA 60 FGKIESKNVF YWFQNHKARE RHHKKRRRGP RDEEDDDGDH QKARSRCLAS EFIYIHLHAR 120 IHFSIYCCTK GKQDLFWQRQ ERETETLELF PLKSCSSDEE KVMSMRSELW GRPFLDAARD 180 PPLDLRLSFI

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in the specification and maintenance of the stem cells (QC cells) in the root apical meristem (RAM). {ECO:0000269\|PubMed:12904206}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF038331	9e-67	KF038331.1 Triticum aestivum wuschel-related homeobox protein (WOX5c) mRNA, complete cds.
GenBank	KF038346	9e-67	KF038346.1 Aegilops tauschii isolate AS2386 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038347	9e-67	KF038347.1 Aegilops tauschii isolate AS2393 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038348	9e-67	KF038348.1 Aegilops tauschii isolate AS2395 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038349	9e-67	KF038349.1 Aegilops tauschii isolate AS2399 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038350	9e-67	KF038350.1 Aegilops tauschii isolate AS2404 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038351	9e-67	KF038351.1 Aegilops tauschii isolate AS2407 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038352	9e-67	KF038352.1 Aegilops bicornis isolate CIae47 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038353	9e-67	KF038353.1 Aegilops bicornis isolate CIae70 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038355	9e-67	KF038355.1 Aegilops searsii isolate PI599160 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038356	9e-67	KF038356.1 Aegilops searsii isolate PI599145 wuschel-related homeobox protein (WOX5) mRNA, complete cds.
GenBank	KF038357	9e-67	KF038357.1 Aegilops longissima isolate PI604123 wuschel-related homeobox protein (WOX5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009409714.1	1e-113	PREDICTED: WUSCHEL-related homeobox 9-like
Swissprot	Q8W0F1	2e-52	WOX9_ORYSJ; WUSCHEL-related homeobox 9
TrEMBL	M0THM3	1e-140	M0THM3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr7P14860_001	1e-140	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9411	36	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11260.1	4e-36	WUSCHEL related homeobox 5

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Li S, et al. OsFIE2 plays an essential role in the regulation of rice vegetative and reproductive development. New Phytol., 2014. 201(1): p. 66-79 [PMID:24020752] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012]